Is this causing any actual problems?
Yes. At least it gives problems with Java applications.
.......
[Failed to open library /usr/lib/classpath/libjavanio.so: /usr/lib/classpath/libjavanio.so: cannot open shared object file: No such file or directory]
[Failed to open library ./libjavanio.so: ./libjavanio.so: cannot open shared object file: No such file or directory]
[Failed to open library /usr/lib/jni/libjavanio.so: /usr/lib/jni/libjavanio.so: cannot open shared object file: No such file or directory]
......
It also happens with some Gstreamer plugins.
(gst-plugin-scanner:252): GStreamer-WARNING **: Failed to load plugin '/usr/lib/gstreamer-1.0/libgstimxg2d.so': libGAL.so: cannot open shared object file: No such file or directory